Progress on Mapping and Cloning of Genes Related to Rice Plant Type

doi:10.3969/j.issn.1006-8082.2014.01.004

Abstract

Abstract: Rice plant type related traits, which include tiller number, tiller angle, plant height and panicle characteristics, play an important role in controlling rice yield. The formation of plant type involves a series of gene expression and expression product exercising functions. So it is important to explore and analysis these genes. At present, researchers made rapid progress in understanding the genes and its functions which controlled plant type. This article outlines the traits for each plant type, reviews the identified genes and their functional characteristics for the further research of molecular breeding and genetsics and physiology.

Key words: rice, plant type, plant height, tiller, panicle traits

摘要： 水稻株型相关性状包括分蘖数、分蘖夹角、株高及穗部性状。株型相关性状都是重要的农艺性状，是水稻产量因素的重要组成部分。株型形成涉及到一系列基因的表达和表达产物行使功能，因此对这些基因的挖掘和功能分析具有重要意义。目前，虽尚未完全了解控制株型相关性状的基因及其功能，但也已取得了日新月异的进展。本文针对各个株型相关性状，综述了已鉴定的基因及其功能特点，以为分子育种运用及进一步遗传生理研究作理论基础。

关键词: 水稻, 株型, 株高, 分蘖, 穗部性状

CLC Number:

S511

LIN Ze-Chuan, CAO Li-Yong. Progress on Mapping and Cloning of Genes Related to Rice Plant Type[J]. , 2014, 20(1): 17-22,27.

林泽川, 曹立勇. 水稻株型相关基因的定位与克隆研究进展[J]. 中国稻米, 2014, 20(1): 17-22,27.

References

[1]    Ward S P and Leyser O. Shoot branching[J]. Curr Opin.Plant Biol，2004，7：73-78.

[2]    Ko S，Junko K. Rice as a model for comparative genomics of plants[J]. Annu Rev Plant Biol，2002，53: 399-419.

[3]    Peng J，Richards D E，Hartley N M，et al. ‘Green revolution’ genesencode mutant gibberellin response modulators[J]. Nature，1999，400:256-261.

[4]    Donald C M. The breeding of crop ideotypes[J]. Euphytica，1968，17：385- 403.

[5]    杨守仁，张步龙，王进民. 水稻理想株型育种的理论和方法初论[J]. 中国农业科学，1984（3）：6-12.

[6]    Stephen AG，Rice as amodel for cereal genomics[J]. Curr Opin Plant Biol，1999，2：86-89.

[7]    程式华，曹立勇，庄杰云，等. 关于超级稻品种培育的资源和基因利用问题[J]. 中国水稻科学，2009，23（3）：223-228.

[8]    Huang N，Courtois B，Wang G L. Association of quantitative trait loci for plant height with major dwarfing genes in rice[J]. Heredity，1996，77：130-137.

[9]    Wang Y H，Li J Y. The plant architecture of rice（Oryza sativa.L）[J]. Plant Mol Biol，2005 59:75-84.

[10] Nakagawa H，Tanaka A，Tanabata T，et al. Short GRAIN1 decreases organ elongation and brassinosteroid response in rice[J]. Plant Physiol，2012，158（3）：1208-1219.

[11] Ashikari M，Wu J，Yano M，et al. Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the α-subunit of GTP-binding protein[J]. Proc Nat Acad Sci USA，1999，96（18）：10284-10289

[12] Fujisawa Y，Kato T，Ohki S，et al. Suppression of the heterotrimeric G protein causes abnormal morphology，including dwarfism，in rice[J]. Proc Nat Acad Sci USA，1999，96（13）：7575-7580

[13] Hooley R. Gibberellins: perception transduction and responses[J]. Plant Mol. Biol，1994，26: 1529-1555.

[14] Ueguchi-Tanaka M，Fujisawa Y，Kobayashi M，et al. Rice dwarf mutant d1，which is defective in the α subunit of the heterotrimeric G protein，affects gibberellin signal transduction[J]. Proc Nat Acad Sci USA，2000，97（21）：11638-11643.

[15] Miura K，Agetsuma M，Kitano H，et al. A metastable DWARF1 epigenetic mutant affecting plant stature in rice[J]. Proc Nat Acad Sci USA，2009，106（27）：11218-11223 .

[16] Izawa Y，Takayanagi Y，Inaba N，et al. Function and expression pattern of the α subunit of the heterotrimeric G protein in rice[J]. Plant Cell Physiol，2010，51（2）：271-281.

[17] Ueguchi-Tanaka M，Ashikari M，Nakajima M，et al. Gibberellin insensitive IDWARF1 encodes a soluble receptor for gibberellins[J]. Nature，2005，437（7059）：693-698.

[18] Sasaki A，Itoh H，Gomi K，et al. Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant[J]. Science，2003，299（5614）：1896-1898.

[19] Ueguchi-Tanaka M，Nakajima M，Katoh E，et al. Molecular interactions of a soluble gibberellin receptor，GID1，with a rice DELLA protein，SLR1，and gibberellin[J]. Plant Cell，2007，19（7）：2140-2155.

[20] Yamamoto M，Hirai T，Yamamoto E，et al. A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor，GID1，and DELLA proteins[J]. Plant Cell，2010，22（11）：3589-3602.

[21] Gomi K，Sasaki A，Itoh H，et al. GID2，an F-box subunit of the SCF E3 complex，specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice[J]. Plant J，2004，37（4）：626-634.

[22] Wang Y H and Li J Y. The plant architecture of rice（Oryza sativa.L）[J]. Plant Mol Biol，2005，59：75-84.

[23] Lo S F，Yang S Y ，Chen K T，et al. A novel class of gibberellin 2-oxidases control semidwarfism，tillering，and root development in rice[J]. Plant Cell，2008，20（10）：2603-2618.

[24] Oikawa T，Koshioka M，Kojima K，et al. A role of OsGA20ox1，encoding an isoform of gibberellin 20-oxidase，for regulation of plant stature in rice[J]. Plant Mol Biol，2004，55（5）：687-700.

[25] Clouse S D，Sasse，J M. Brassinosteroids: Essential regulators of plant growth and development[J]. Ann Rev Plant Biol，1998，49: 427-51.

[26] Nemhauser J L，Mockler T C，Chory J. Interdependency of brassinosteroid and auxin signaling in arabidopsis[J]. PLoS Biol，2004，2 （9）：e258.

[27] Cao-Delgado A，Yin Y，Yu C，et al. BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis[J]. Development，2004，131 （21）：5341-51.

[28] Hewitt F R，Hough T，O'Neill P，et al. Effect of brassinolide and other growth regulators on the germination and growth of pollen tubes of “Prunus avium” using a multiple hanging drop assay[J]. Aust J Plant Physiol，1985，12（2）：201-211.

[29] Li J, Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction[J]. Cell，1997，90: 929-938.

[30] Hong Z，Ueguchi-Tanaka M，Fujioka S，et al. The rice brassinosteroid-deficient dwarf2 mutant defective in the rice homolog of arabidopsis DIMINUTO/DWARF1 is rescued by the endogenously accumulated alternative bioactive brassinosteroid dolichosterone[J]. Plant Cell，2005，17（8）：2243-2254.

[31] Mori M，Nomura T，Ooka H，et al. Isolation and characterization of a rice dwarf mutant with a defect in brassinosteroid biosynthesis[J]. Plant Physiol，2002，130（3）：1152-1161.

[32] Tanabe S，Ashikari M，Fujioka S，et al. A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant dwarf11 with reduced seed length[J]. Plant Cell，2005 17（3）：776-790.

[33] Yang G X，Nakamura H，Ichikawa H，et al. OsBLE3，a brassinolide-enhanced gene，is involved in the growth of rice[J]. Phytochemistry，2006，67（14）：1442-1454.

[34] Tong H N，Liu W B，Li F，et al. Dwarf and low-tillering，a new member of the GRAS family，plays positive roles in brassinosteroid signaling in rice[J]. Plant J，2009，58（5）：803-816.

[35] Bai M Y，Zhang L Y，Gampala S S，et al. Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice[J]. Proc Nat Acad Sci USA，2007，104（34）：13839-13844.

[36] Yamamuro C，Ihara I，Wu X，et al. Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint[J]. Plant Cell，2000，12（9）：1591-1606.

[37] Bouwmeester H J，Matusova R，Zhongkui S，et al. Secondary metabolite signalling in host-parasitic plant interactions[J]. Curr Opin Plant Biol，2003，6: 358-364.

[38] Umehara M，Hanada A，Yoshida S，et al. Inhibition of shoot branching by new terpenoid plant hormones[J]. Nature，2008，455: 195-200.

[39] Lin H，Wang R X，Qian Q，et al. DWARF27，an iron-containing protein required for the biosynthesis of strigolactones，regulates rice tiller bud outgrowth[J]. Plant Cell，2009，21（5）：1512-1525.

[40] Takeda T，Suwa Y，Suzuki M，et al. The OsTB1 gene negatively regulates lateral branching in rice[J]. Plant J，2003，33（3）：513-520.

[41] Arite T，Iwata H，Ohshima K，et al. DWARF10，an RMS1/MAX4/DAD1 ortholog，controls lateral bud outgrowth in rice[J]. Plant J，2007，51（6）：1019-1029.

[42] Zhang S Y，Li G，Fang J，et al. The interactions among DWARF10，auxin and cytokinin underlie lateral bud outgrowth in rice[J]. J Integr Plant Biol，2010，52（7）：626-638.

[43] Zou J H，Chen Z X，Zhang S Y，et al. Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice （Oryza sativa L.） [J]. Planta，2005，222（4）：604-612.

[44] Lin H，Wang R X，Qian Q，et al. DWARF27，an iron-containing protein required for the biosynthesis of strigolactones，regulates rice tiller bud outgrowth[J]. Plant Cell，2009，21（5）：1512-1525.

[45] Yu B，Lin Z，Li H，et al. TAC1，a major quantitative trait locus controlling tiller angle in rice[J]. Plant J，2007，52（5）：891-898.

[46] Li X Y，Qian Q，Fu Z M，et al. Control of tillering in rice[J]. Nature，2003，422（6932）：618-62.

[47] Lin Q B，Wang D，Dong H，et al. Rice APC/CTE controls tillering by mediating the degradation of MONOCULM 1[J]. Nat Commun，2012，3：752.

[48] Liu W Z，Wu C，Fu Y P，et al. Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice[J]. Planta，2009，230（4）：649-658.

[49] Zou J，Zhang S，Zhang W，et al.The rice high-tillering DWARF1 encoding anortholog of arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds[J]. Plant J，2006，48:687-698.

[50] Jin J，Huang W，Gao J P，et al. Genetic control of rice plant architecture under domestication[J]. Nat Genet，2008，40 （11）：1365-1369.

[51] Tan L，Li X，Liu F，et al. Control of a key transition from prostrate to erect growth in rice domestication[J]. Nat Genet，2008，40（11）：1360-1364.

[52] Ku L，Wei X，Zhang S，et al. Cloning and characterization of a putative TAC1 ortholog associated with leaf angle in maize （Zea mays L.）[J]. PLoS ONE，2011，6（6）：e20621.

[53] Li P J，Wang Y H，Qian Q，et al. LAZY1 controls rice shoot gravitropism through regulating polar auxin transport[J]. Cell Res，2007，17（5）：402-41.

[54] Yan W H，Wang P，Chen H X，et al. A major QTL，Ghd8，play pleiotropic roles in regulating grain productivity，plant height，and heading data in rice[J]. Mol Plant，2011，4（2）：319-330.

[55] Oikawa T，Kyozuka J. Two-step regulation of LAX PANICLE1 protein: accumulation in axillary meristem formation in rice[J]. Plant Cell，2009，21（4）：1095-1108.

[56] Jiao Y Q，Wang Y H，Xue D W，et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice[J]. Nat Genet，2010，42（6）：541-544.

[57] Ashikari M，Sakakibara H，Lin S Y，et al. Cytokinin oxidase regulates rice grain production[J]. Science，2005，309（741）：741-745.

[58] Huang X，Qian Q，Liu Z，et al. Natural variation at the DEP1 locus enhances grain yield in rice[J]. Nat Genet，2009，41:494-497.
[59] Miura K，Ikeda M，Matsubara A，et al. OsSPL14 promotes panicle branching and higher grain productivity in rice[J]. Nat Genet，2010，42（6）：545-549.

[60] Li S B，Qian Q，Fu Z M，et al. Short panicle1 encodes a putative PTR family transporter and determines rice panicle size[J]. Plant J，2009，58:592-605.

[61] Komatsu M，Chujo A，Nagato Y，et al. FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets[J]. Development，2003，130:3841-3850.

[62] Zhao K Y，Tung C W，Eizenga G C，et al. Genome-wide association mapping reveals a rice genetic architecture of complex traits in Oryza sativa[J]. Nat Commun，2011，2:467.

[63] Huang X，Wei X，Sang T，et al. Genome-wide association studies of 14 agronomic traits in rice landraces[J]. Nat Genet，2010，42（11）：961-967.

[64] Huang X，Zhao Y，Wei X，et al. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm[J]. Nat Genet，2012，44：32-39.

[65] 程式华. 粮食安全与超级稻育种[J]. 中国稻米，2005（4）：1-3.

[66] 周开达，马玉清，刘太清，等. 杂交水稻亚种间重穗型组合的选育——杂交水稻超高产育种的理论与实践[J]. 四川农业大学学报，1995，13（4）：403-407.

[67] 袁隆平. 杂交水稻超高产育种[J].杂交水稻，1997（6）：1-6.

[68] Khush G S. Prospects of and approaches to increasing the genetic yield potential of rice. In “Rice Research in Asia，Progress and Priorities”，edited by R.E. Evenson et al. CAB International and IRRI，1996，59-71.